Recently visited
Please sign in to see a list of articles you recently visited.
Recently updated
 SOX9
Homo sapiens
 HIF1A
Homo sapiens
 Pax6
Mus musculus
 PAX6
Homo sapiens
 Snai2
Mus musculus
 PPARA
Homo sapiens
 Ppara
Mus musculus
 Thrb
Mus musculus
 SNAI2
Homo sapiens
 Tbr1
Mus musculus
Transcription Factor Encyclopedia  BETA

About

The long-term goal of TFe is to create an online encyclopedic collection of well-studied transcription factor proteins in the human, mouse, and rat genomes, combining a mixture of both expert-curated and automatically-populated content to provide users with a wide set of information relevant to a transcription factor protein of their interest.
In the short-term, we are working with experts from around the world to produce over 100 high-quality "mini review" articles of key transcription factors for publication in a peer-reviewed, open-access journal.
The TFe provides details of transcription factor binding sites in close collaboration with Pazar, a public database of transcription factor and regulatory sequence information. Our TF classification scheme is derived from TFCat. The TFe is an initiative of the Wasserman laboratory.

Team

Wyeth Wasserman
Wyeth Wasserman, PhD
Principal Investigator
Elodie Portales-Casamar
Elodie Portales-Casamar, PhD
Lead, Pazar Team
Phil Bradley
Phil Bradley, PhD
Lead, Structural Prediction
Dimas Yusuf
Dimas Yusuf, MD (cand)
Project Management, Software
Warren Cheung, PhD (cand)
Statistical analysis
Debra Fulton, PhD
TF Classification
Stefanie Butland, MSc
Project Management (alumnus)
Magdalena Swanson, MSc
Project Management (alumnus)
Amy Ticoll, BSc, MBA
Structural Prediction (alumnus)

Content

Transcription factor articles  
Human articles 216
Mouse articles 585
Rat articles 2
Total 803
Articles with authors 180
Articles with binding site data 329
Participating authors 114
Article completion scores (164 articles with authors)
About 120 articles score 50% or more.

Participating authors

  Note: this list may change prior to publication depending on participation and article completion.
Australia
Daniel J. Peet, Sam W. Z. Olechnowicz
Canada
Charles N. de Leeuw, Christopher T. D. Dickman, David Laperrière, David P. LeBrun, Debra L. Fulton, Dimas Yusuf, Edwin Chen, Elizabeth M. Simpson, Elizabeth Wederell, Elodie Portales-Casamar, Jonathan S. Lim, Juan Hou, Juliet M. Daniel, Kyster K. Nanan, Magdalena I. Swanson, Margaret R. Hough, Marieke Rozendaal, Mark W. Woodcroft, Pamela A. Hoodless, Rebecca L. Cullum, Stefanie L. Butland, Sylvie Mader, Warren A. Cheung, Wyeth W. Wasserman, Xiao Yu Cindy Zhang
Denmark
Lars Grontved, Susanne Mandrup
France
Bérénice A. Benayoun, Dominique Leprince, Gaylor Boulay, Mireille Vasseur-Cognet, Oscar H. P. Ramos, Reiner A. Veitia
Germany
Gerhart U. Ryffel, Michael Wegner
Italy
Mariastella Zannini, Tiziana de Cristofaro
Poland
Jerzy Ostrowski, Michal Mikula
Spain
Leonardo L. Beccari, Luis del Peso, Paola Bovolenta, Raquel Marco-Ferreres
Sweden
Chunyan Zhao, Karin Dahlman-Wright
Switzerland
Christophe Héligon, Gieri Camenisch, Mario P. Tschan, Roland H. Wenger
The Netherlands
Astrid Eijkelenboom, Bianca Blom, Julien J. Karrich, Marrit Putker
United Kingdom
Alison H. Banham, Eric W.-F. Lam, G. Nicholas Europe-Finner, Helma D. C. Schwenen, Jan J. Brosens, Jarrod Bailey, Lara J. Monteiro, Magdalena Karolczak-Bayatti, Michael Taggart, Miranda S. C. Wilson, Padma-Sheela Jayaraman, Peter John Noy, Philip J. Brown, Ralf Kist
United States
Amy Ticoll, Angie Rizzino, Bruce E. Torbett, Capucine Van Rechem, Carol F. Webb, Christopher J. Harvey, David S. Sharlin, Douglas Forrest, Eugene Bolotin, Farhad Vesuna, Frances M. Sladek, Harini Chakravarthy, Henriette O'Geen, Jake M. Schnabl, Jason P. DeBruyne, Jason Park, John B. Hogenesch, Kathleen Joyce Millen, Kelly L. Prince, M. Michela Mancarelli, Marissa Cathleen Blank, Mary B. Breslin, Matthew E. Witek, Michael S. Lan, Michaela Liedtke, Michelle Vaz, Oliver Hankinson, Peggy J. Farnham, Philip H. Bradley, Rachel D. Mullen, Richard M. Gronostajski, Robert F. Hevner, Rumela Chakrabarti, Satrajit Sinha, Scott A. Waldman, Scott Ferrell, Sekhar P. Reddy, Seth Frietze, Shyam Biswal, Simon J. Rhodes, Stephanie C. Colvin, Venu Raman, Xin M. Luo, Yunfu Sun, Yuriko Mishima,