Worm Single Site Analysis

Version 1.5

Select Analysis Parameters

STEP 1: Enter a list of co-expressed genes

Species:
C.elegans (C.briggsae is not supported)

Gene ID type:
Wormbase Caenorhabditis Genetics Center RefSeq Sequence / Ensembl

Note: RefSeq id support is limited


Paste gene IDs:



OR upload a file containing a list of gene identifiers:



STEP 2: Select transcription factor binding site matrices

JASPAR CORE Profiles

All profiles with a minimum specificity of bits (min. 8 bits)

OR select by taxonomic supergroup:
plant  vertebrate  insect 

OR select specific profiles:

JASPAR PhyloFACTS Profiles

All profiles with a minimum specificity of bits (min. 8 bits)

Worm Predicted Profiles

All profiles with a minimum specificity of bits (min. 8 bits)



STEP 3: Select parameters

Level of conservation:


Matrix match threshold:
%


Amount of upstream / downstream sequence:


Number of results to display:
Top results
OR only results with Z-score >= and Fisher score <= (Default values have been chosen based on empirical studies)

Sort results by:
Z-score Fisher score


Press the Submit button to perform the analysis or Reset to reset the analysis parameters to their default values. Depending on server load, the analysis may take anywhere from a few seconds to a minute or more to perform. Please be patient.